NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206354_11666860

Scaffold Ga0206354_11666860


Overview

Basic Information
Taxon OID3300020081 Open in IMG/M
Scaffold IDGa0206354_11666860 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013397Metagenome / Metatranscriptome271Y
F104731Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0206354_116668601F013397N/AMNSIAATLIIRERLQQCLLHEAWRCQGEYAGGCLCDGCGEITSAQASYEVDFLSSVTPQTVKLHRACFEIWLYEGGSSLSPNVPERRSRKE
Ga0206354_116668602F104731AGGAGMMNLTLIDAFRRFGAKPDSRLESLSAMAADGAMVLNCRPAHFGHPARGVLRYETSLSAAGADSKVVIALGEHLTRARDADLPVRMIVTFPDGAKTGKGGSYHVRPDLTGKIVEFD
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