NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197143_1054479

Scaffold Ga0197143_1054479


Overview

Basic Information
Taxon OID3300020139 Open in IMG/M
Scaffold IDGa0197143_1054479 Open in IMG/M
Source Dataset NameSediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)900
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Nevada
CoordinatesLat. (o)40.6614Long. (o)-119.3661Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032666Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0197143_10544791F032666AGGAGGMKRVLTLIAATALTASAVMAQTVVRISAYNPFVPTIVGHPNLGPIDQSGAGPFPALQSGVLPGNQDGIYTLFLSVHPDQTWLTGGPNTSSRWSTLSFSITYDSNYIDFVFRDPNNGSDVFVSSLNVGSVFSPYILANAPATGVAAGQVNAKSGSDVTVTFTLAATSNGNGLTSPPEARGYLRDWFKNNFDDELLRVRVNGPAIAALSNQTYSVRPGV
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