NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179590_1000671

Scaffold Ga0179590_1000671


Overview

Basic Information
Taxon OID3300020140 Open in IMG/M
Scaffold IDGa0179590_1000671 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4574
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000313Metagenome / Metatranscriptome1323Y
F002349Metagenome / Metatranscriptome568Y
F067067Metagenome / Metatranscriptome126N
F096699Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0179590_10006712F067067AGGMKREPFQKANLVFSIQIINRVGEPRIYQVAITGDDVRNFFVGITPIQNARHGVKALIQTWCEQHGDKWPKDGETVAMDLDEVQVARQRLG
Ga0179590_10006713F096699GGAGMTNEYRIESVSNAFIVIDDLGEPVGRYPTEEAAQQDIERCKKEDAMWETAKLLVDTAIKSHMKIHGVDRETAAYWINSALGGA
Ga0179590_10006715F002349AGGAGGMVVCCVNHCAYCRAPIASGERWVREKVYDPALNGRDPSYHRYHAEPFAGQEASCWERHQMETEIGRTDAYAA
Ga0179590_10006717F000313AGGMKIIERWLLFKYVEGQFTPLSKPFKSKAAAEKARSKLPERERRSVAVGVIRIEK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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