NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179590_1025633

Scaffold Ga0179590_1025633


Overview

Basic Information
Taxon OID3300020140 Open in IMG/M
Scaffold IDGa0179590_1025633 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1420
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007488Metagenome / Metatranscriptome350Y
F009517Metagenome / Metatranscriptome316Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0179590_10256331F009517AGGGGGMGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGIAE
Ga0179590_10256332F007488N/AMKIRAYDEGDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALERGLEDVHAWLPPEIAKKFGKRLGRLGWIRDDEWTPYCKKLI
Ga0179590_10256333F106044AGGAGMPNLTYNATWDFNPADTVTLNAAFTFDLQDPNYNQTVSGVLTTLQGRTPHVTLAQTDNATISVAVTIQG
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