NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1107511

Scaffold Ga0211732_1107511


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1107511 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021538Metagenome218Y
F043400Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11075112F021538N/AMETTIINCDCLCHSLHIRPDVESKTVDISLWNYGFNDGKLDWKKRLQILIDGFAYSDLVVLDKEELNKLIATLEDARGKLA
Ga0211732_11075113F043400AGGAGMFNFFKKKLPTDFDQVQDKGREIGEIFFKPTQELQEDFNLIDKVNKSRFEDFQVSSFASFFEKLELIPTVDLGDVNLKIRTTNPSAPIDADLCQVWMRRTYTNPATGQTTEQWLNWVPNDDAAKKYFKFSLFSGETQTFNFDVSTFDVGKYDSFRFIFFTNHWTVLADQMAENVSFEITTKQKRVKAPFVEILADKIQDP
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