NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1175929

Scaffold Ga0211732_1175929


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1175929 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9869
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005531Metagenome / Metatranscriptome397Y
F010085Metagenome / Metatranscriptome308Y
F021757Metagenome217Y
F037095Metagenome / Metatranscriptome168Y
F043932Metagenome / Metatranscriptome155Y
F063685Metagenome / Metatranscriptome129Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11759291F021757GGAMMTRKDYTATAEILSSYKDLIGDEFTYHDLVDEFASMFAQDNSNFDADKFFNACMINVM
Ga0211732_117592912F010085AGGAGGMKIQYVSKYLSLSKEGLVPRIDCPVDQGSLLCNTDKEDKIFLYCLSCNYKIYIGLKFYDNIKGLVENAIR
Ga0211732_117592915F037095AGGAGGMAKAKEDLNGDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLLMGGFAATAPVLLKALNPNEKSFGFTNK
Ga0211732_117592919F043932AGGMAKKFKSLLNLLTLAEDPVIGSTGDVYFNVTSKNIKIYNGAMWVDLTPGSSDPAPFYMHTHSYDGNVHTVNLQQTINFDTDINNNANVLETSPAIIGLDGGTPTSSYIKPSYTELTLLDG
Ga0211732_11759292F063685GAGGMTIELDQYGFMLDTEWAYVALSWQLLITTALLVTAYKIYKRKKNK
Ga0211732_11759293F005531GGAGMTITYSLWQGANLLSVDNKATSADELLNVMTELNKLGKGFTYNVRGVEVK
Ga0211732_11759295F087194AGAAGMNLEEYKQMVEAQRLASLAIALEALNKSAAIAKEMNK
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