NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1257184

Scaffold Ga0211732_1257184


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1257184 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3129
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F005348Metagenome / Metatranscriptome403Y
F060846Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_12571841F005348N/ASVMTFKCDECNGAGYIFWGDNLEYDVEKCQCENFALGTLFTTKEND
Ga0211732_125718411F060846GGAMARSKPISVKIATAKVIQALETKLAQVEADYAKQDEKEAKYK
Ga0211732_12571845F000808GAGGMDNEYTYSLTTLYDGELINTLRVSDMLEAVSAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0211732_12571848F003393GAGMIDLENDDTIAIMDYYKVDVLTAGQLMVDDNILIGDEVVAIVEIISLPDGYTLEVVNDFGERDIIQVGEYDQFDLMMLQ
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