NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1286910

Scaffold Ga0211732_1286910


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1286910 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2704
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F029104Metagenome189Y
F073560Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_12869102F005589N/AMAKYKHSFFRYVPSTEKYKSEFKFVESIESDSDAVPEFHDHYCIDHVVDSETGQMRVKNHSAPEYCVSKYVGWSLSLPPVEKTTKQEVYVVIHRSSFSHKKIEFDDFIEPYGKRYTQEDWEFLLSTIEKRFNKQKDWAKVGIRVPSQYEDGTQVFKTEEEFRAFSLGRRAYFLYHLVKNYNFIHLVRRLNIGYTG
Ga0211732_12869103F073560AGGAMLVCDVSAIDKLIDMYGENLSVHYNNDKFLLYDLRDEFVDNNKECSIDTHKVSSKGIQKDEVIIVSIDPHQEFSRDDTINL
Ga0211732_12869104F029104N/AMKTNFKEFLAKIDYNDPSEYDFDSDDKIDNNIKETIKNINKSSWCWTLWSCEGHIHSDSEKSLPYFVFIVKKKSIPVLLEMLFNTLNPQVNVSTSFPLINTNYISLSWGFTDDKYAIMNVHWSDLFLDDEESHAKLLSDIYDMSFKILEAKL
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