NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1331588

Scaffold Ga0211732_1331588


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1331588 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3680
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F002935Metagenome519Y
F003422Metagenome / Metatranscriptome487Y
F043940Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_13315883F043940AGGMKNRFRAEIYDANKMNDVTIYSEQGIDKAYLTELAFSNRNKFFGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNQLTRDELGL
Ga0211732_13315886F002935GAGGMSDRTKGYIGTIVDGKKLAVIANGIYNLQYSSDFSECTVDSLLFVELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDRTEDISDYIRVFGSRLDNNCNLWQSKMSVAPGILPV
Ga0211732_13315887F003422N/AMTNELVSTKYTFACDPDECDVLIELTSSDGFGFPSGVMEVTCPCGRKPVLLSVVNATIATSNQTKEEKMETTTIGSDAFHSPAVEYNPDLLVTYKVIRGYSDPEFTTSKVTSLEWDLHNGRQSQKTANMLQSNINTVKDIITEAYGDSDDQETLRSIAEALSIPLTRTVEWTASIEVSGTIELDLLSDYDTDLESEITDNLFADSHNGNIEVIDQEVCHVREC
Ga0211732_13315888F000311GGAMYFELTAPDRLSMERAYWDAQIIGLDPEAMSPLTFNIGTGSIEKVSRIRDKYNLTESYWS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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