NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1350830

Scaffold Ga0211732_1350830


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1350830 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10028
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F003601Metagenome / Metatranscriptome477Y
F055681Metagenome / Metatranscriptome138N
F077223Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_135083010F077223N/AMSFLVAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEMRYVRNSEQLALQGQPQPDGSWKYVEPNGCVHTMTAERAQAFMQQTHEHANIMCTMLDRLREAGLMDNIVDTEAQTA
Ga0211732_13508303F001165N/AMPLIPPFNDAPKPRIPDAIDKQRLQAMQLVAKMKESADKYGVGFVGGFISPNGEKFMMTNMNSNDTNALLPDDLK
Ga0211732_13508306F055681N/AMIGFSLEFKRWYVVIRGPKGTVYSAFGFAKQMPVFTPAKTMTLQEYIDDYNEAIVFTNEEGEELMRI
Ga0211732_13508308F003601AGGAMTEHTDEQLLAMAMANLGEYMHDHSPHYVLIEEDPRNDEDYDTWEVGMEPLPYDHTWRSTSLDVDVSPINPS

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