Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1350830 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10028 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001165 | Metagenome / Metatranscriptome | 760 | Y |
F003601 | Metagenome / Metatranscriptome | 477 | Y |
F055681 | Metagenome / Metatranscriptome | 138 | N |
F077223 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211732_135083010 | F077223 | N/A | MSFLVAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEMRYVRNSEQLALQGQPQPDGSWKYVEPNGCVHTMTAERAQAFMQQTHEHANIMCTMLDRLREAGLMDNIVDTEAQTA |
Ga0211732_13508303 | F001165 | N/A | MPLIPPFNDAPKPRIPDAIDKQRLQAMQLVAKMKESADKYGVGFVGGFISPNGEKFMMTNMNSNDTNALLPDDLK |
Ga0211732_13508306 | F055681 | N/A | MIGFSLEFKRWYVVIRGPKGTVYSAFGFAKQMPVFTPAKTMTLQEYIDDYNEAIVFTNEEGEELMRI |
Ga0211732_13508308 | F003601 | AGGA | MTEHTDEQLLAMAMANLGEYMHDHSPHYVLIEEDPRNDEDYDTWEVGMEPLPYDHTWRSTSLDVDVSPINPS |
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