Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1576003 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14197 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (29.41%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F076091 | Metagenome / Metatranscriptome | 118 | Y |
F082694 | Metagenome | 113 | Y |
F085382 | Metagenome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211732_157600310 | F085382 | N/A | MSIYQTFLADFQGLLADVGVPASVNGNLFLVALSRPMNTPKFDAGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPMASLAEGKKLTVNGQVLRVKGQAYKQASAVIELECIDDNQ |
Ga0211732_157600312 | F082694 | AGG | MGYKSARHIVEAVLASYLDSQPELAGVTFYTGDSAETATLPKCVVLCDSARLPNDFPDGLGNYNCGVRVTVFDSADDTTLSQHRERCAAIAGAMQDLDLIKSGFVASGDALCYDITPTAEDEGVNERSWASVFSYDLLIVVNPQ |
Ga0211732_15760035 | F076091 | GAGG | MPLGLFVGLDEDTLLAYKQQALADMGLAVTSYSDSGTSVNKQWGVPPQTRLLELNFALSKLDPKKYGGAHTSVQITWTDRVDL |
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