NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196976_1000060

Scaffold Ga0196976_1000060


Overview

Basic Information
Taxon OID3300020147 Open in IMG/M
Scaffold IDGa0196976_1000060 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70360
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (61.90%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068101Metagenome / Metatranscriptome125Y
F068102Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0196976_100006016F068101AGGAGMATQRSSDHERSAAGLDFDDSDPIRSNAAAIGAKMVQEGPDALFNELENLLPEAWQDQIKAFPIAAVALGVGVGVWLGLKKSDEIITAGTALVSSAAMANVSQVMDKINKG
Ga0196976_100006037F068102GGAGMVKPIIVALAAVLLFGCSKPEPLTAAKAQEIIGGWSFKREPVYAEVPQKVWWTPKAPKDDYDEKALRTLRNLERAGLVTVTESDVTADSATYVAKVTKKGFPILGTAPSARGPVYRARICEKRYDGIRNFVRHPTEETVGHAELVWHYANPNELYPLFETKINKPVNQPFVSHVSFWYDKHQWRFEVNVRKVASSAAALPLPR
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