NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10056622

Scaffold Ga0211736_10056622


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10056622 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2678
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F073145Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_100566221F073145AGGAGGMAQSVGNAKNILVGASPLFLSTIDVNDADYIQNAEPGVAIAATAGNAAIPAFVSTVSYTDTLNTVNQTAGLFGYRNVGFTNNGLQITYNPTYDSVTVDQLLDTAKLFKSAMEVMIATEMS
Ga0211736_100566222F000258GGGGGMTANYKLDAMLELRKFLWSKLKLASIFDETDYYSDNIEETIVPIIPVQQSAELNQFLSGKKHIVYDKIGISYEDNWLVCCEQVLFTIYSTDVSEINEIRNFMTDQFRRMDDSAKDVNGFATLSNKFKFHSIFIADISPTAPSEELQGFLSADVILEVKYSRITDTVGRFS
Ga0211736_100566224F001229N/AMQDLIQSVLSMKLDVYKQIDTQNADTGAIVKEWLFYKTVDCHAKGVVSNSATTRSSDKQIFNNKYVNDQIIQVRTENRLTTREKVTNIRDMSGNYIWVELDFPTETPTVFEVMGTTPLTDPFGRVIGYNSSMKRSENQQIGL
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