NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10081540

Scaffold Ga0211736_10081540


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10081540 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3842
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004154Metagenome / Metatranscriptome450Y
F005349Metagenome / Metatranscriptome403Y
F095483Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_100815401F005349N/AMYVIHKQLIPTDTNMGDPNWAKRQIWVLKLNPNDTIDEFENLEDAEVKKNELISSDPTGRIYKISIKNEDGSFSDS
Ga0211736_100815402F095483AGGAMKKFLQWWKVAGQLWGFVLLIGTLCGIMIGFMDEMRTNSWLSLAWLVLFFGGSIWYAWQMRVHGWKMAQNIRDTH
Ga0211736_100815403F004154N/AMWNKVKYYALRYWVSVSFILLAIYFYQPSQSITHCSPNILLTDIEPKTLLGLGEMSWMWLLMAIAHSANTCYCDIKSLLRKK
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