NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10170326

Scaffold Ga0211736_10170326


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10170326 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4588
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F006112Metagenome / Metatranscriptome381Y
F018539Metagenome234Y
F043926Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1017032611F043926GGAGMVKWECQMFYKDKLYSGHYWGDELSLARARRKVAELQRYHPAMRFVLTDWQKGSIIELHKRTKELA
Ga0211736_1017032612F006112GGAGMKQDYTLYIYKADKRTKTGERLFSTTVWTGTDDNGMRRTVADMFDLYPPSKGWRFDWTPSMKRVRNLMSGVEIEIPHDTPRSCDPSSELYWSM
Ga0211736_101703262F004978AGGMITADTLETLTTYSPQYLTRAAQLAGYKGPDFTGCRFIGITNGGQFCYTAVFQVKGGTDSTKIFLSYDHAEDKVIADYHLTEVF
Ga0211736_101703269F018539AGGAMSTVYNANTAKAKVIYYKDKETYKIIFAFNVHKKVKDNGEIVHMFPTQAKCAYVSGDINYETLQADKERIIEQAKKTMRTNSVEFV
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