NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10198408

Scaffold Ga0211736_10198408


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10198408 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1328
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F013517Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_101984082F013517N/AMVESLFAIVLPVVKDLLWAAAGMLLTYALNKIQTQFNTI
Ga0211736_101984084F001018N/AMAHITKTKLEDLSIIKLYDHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYAMAAHEDALERIKKEGELIAQAKRHHESQLTQLRNLLGWLRRALPLNSNRIQGKNYEFVLSKKKDFTVEITSDPEFWHTDERSKYCIQQETTTTKRIVVRSISGEVLSDRTEPKTKLETLPNLDALRNAYQNGEHLPPGVKVEQQYAIRKNRLFSTKRMESQAPEYFGELLQEPDSAD
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