NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10210975

Scaffold Ga0211736_10210975


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10210975 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16941
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (59.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010681Metagenome / Metatranscriptome300Y
F022879Metagenome / Metatranscriptome212Y
F025022Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1021097513F010681N/AMIMRLTPNQQFWANIFRCAVERSNLYFQDKDLDRHAREHTTVVLALQKGEQFWKELL
Ga0211736_1021097525F025022N/AMELTVIAIKREDGLYHFDHPHNDTVEELLMNGTQEAIDEHCYFKNGKYPIEGDEVEISLFLEEPADYDTLLVKEVSDEEGTTYTDTTMCVPVWLCPWNQGYFGFVPEKIYVKIYPINKGLENFVKATGMKKMLNK
Ga0211736_1021097537F022879N/AMTNHVMHTNKMLFDLKTQYQTQISRLQNKINEQEEEIAKLKTLISLLCVEKEYEV
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