NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10226997

Scaffold Ga0211736_10226997


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10226997 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3875
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F025974Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_102269972F007029AGGMGFMDNYEDVNSRIKRFRTEFPSGRLIAYIEDINLEKGTILVKAEAYREYEDAVPSAVDYAFGNVATLPQNMKKWFIEDCITSAYGRVIGLLTPSEHARPTVQDMQKVEAALADPDPWSTKASNEGIPTMATAIAEIQQGLGGELPAEPPRCVHGTRVWAEGTSAKTGKAWAAWRCTQNNKNTQCDPLWQVVGSDGKWKTQQ
Ga0211736_102269973F015095AGGMEKAQLAVGIALGGFTILGLGAGLIRHFVKYYLSELKPDGNGGHNLRGRIDYIEAKQERMDAKIDKIYEILLETRLAQ
Ga0211736_102269974F002269GGAGMKEQLIAAGKSYLRSAAACVGALYLSGITDPKVLANAFIAGLIGPLLKAVQPSEKQLGVGSK
Ga0211736_102269976F025974GGAGMPNPTRIEVNCTTGEVLEIELTDAEVAELELQAALAAQDKADRETLAAQRATAKAALLERLGITADEAALLLS
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