NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10256548

Scaffold Ga0211736_10256548


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10256548 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2975
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002268Metagenome / Metatranscriptome576Y
F014135Metagenome / Metatranscriptome265Y
F022413Metagenome / Metatranscriptome214N
F030431Metagenome / Metatranscriptome185N
F085161Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_102565481F014135GGAGMSSGLMLDYDIADKITLLTLKDQLKYLRKELKDFKDGKWLHPEDVANNIKIIAALELLIPYYGGTV
Ga0211736_1025654810F030431GAGGMSDIEIEINELLDTTVMLCEEVAAQVGCPVELVEKIVEKRWNDTLFSDADFMNGYDMAKENA
Ga0211736_1025654812F085161GAGMEVYIVKSYGPENGWVNLKAFDNNDAAVYFANTVEKQIPDDSEDEFVEIEVLNVRSWN
Ga0211736_102565484F002268GGAGMANSSTGITGFIEIFEGRLNKMKLHLKEELTKAKDDRDRKAIRRIISDARKLNKTLKEMRSVNTKLCPHCGEKL
Ga0211736_102565486F022413AGGAMLLAKPKLTNTLDAKQFETFTECQEYLESYTDIAMPLVEWIALGKILVAETMTTPEFYPKKVKGEIVMTKFDIEEFA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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