NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10324693

Scaffold Ga0211736_10324693


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10324693 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2580
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018370Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_103246932F018370N/AMIHILWCTLRPTQFKEMHSEWIKRTDNPENIQTYVCVNWQQHADELKEYLSKNYLITLNTNKIGVCYPSHQLSSNLGIKMGQCKDDDIVVFASDDFMAPQGWDTYLINKFRGKGDVGLMVRDGYQLPDSTNMLHPAITIPIMTYGCLKKLNMTIYHPAYNHMFSDCELYMNLKDLDLLYDDRINDETTFEHLHYAAGKRQADGADQAYNAKWGEDDITWNKRKLMEVEKRILV
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