NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10409189

Scaffold Ga0211736_10409189


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10409189 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8601
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (67.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009071Metagenome / Metatranscriptome323Y
F020144Metagenome / Metatranscriptome225Y
F044304Metagenome / Metatranscriptome154Y
F047662Metagenome / Metatranscriptome149Y
F099268Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1040918921F099268AGGMKLIDRYNEYYNDEYSASPWGSLTSMEHLQATTIRAVLYAFARKYNMKESISVEDLNNLADLIEEQGNESNKRHETVMKAAQEHSTDAP
Ga0211736_1040918922F047662AGGAMDYETYIDIKQYSVDEYFYYKLRVTDVINMDYYYEGNAKTLDDVMDRIKEHLKNHQN
Ga0211736_1040918923F044304N/AMTTLNLTKRQIIILNLALTTLYDEIAKSGEGVKMRDEIMEFSRYIQKQTQEEN
Ga0211736_1040918924F020144GAGGMSNFYTKLPGCDVVRSKIDVFTMPDPDDEKRFHRVELTVDNDGVFITSCDRAAREDMSISQKDLAIALAKAILEAYD
Ga0211736_1040918926F009071GGAMPFFPDCYDEWGLYKITYDGDHKMYDMLFEGTEEQCRQYAYENYTDKEQTNMCLMDWEAREWDV
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