NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10416650

Scaffold Ga0211736_10416650


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10416650 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8763
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F006841Metagenome / Metatranscriptome363Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_104166505F000258GGGGGMTANYKLDAMFEIRKYLWDNLVAYNVFDPEEYYSDSLGDVIIPIIPIQQSPEMNQFLSGKKHIVYDKVGLSYEDNWLICCEQLLFTIYSTDVSEIAEIRNLMTDLFRRMDDSARDINRSDNINDKFKFHSIFIADISPTEPSQELQGFLSADITLEIKYSRITDQAGRFL
Ga0211736_104166507F006841AGGAGGLATTVYNVEEIELQNGSKIKLKPLSIKALRLFMAEIQKTQAAENEDETLTILINACGIAIQSQLPDLVADKDALEEALDMPTINRILDVCGGIKLDDPNQLAAMVLAGQN
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