Basic Information | |
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Taxon OID | 3300020151 Open in IMG/M |
Scaffold ID | Ga0211736_10478877 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4010 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 4 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004666 | Metagenome / Metatranscriptome | 428 | Y |
F008305 | Metagenome / Metatranscriptome | 335 | Y |
F038669 | Metagenome / Metatranscriptome | 165 | Y |
F063708 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211736_1047887710 | F038669 | GGAGG | MNLTKLPPHLQKLIDMGESGTDIMHGELKNLMYECETKLLDISELQDNPEYKYILGRLDALTECYILTYNLAFALNERIVSRG |
Ga0211736_1047887711 | F063708 | AGAAGG | MKTHSTDNMIEYMKLHLISLEQDLEMNPESINVVDIPGQIYAVRHLLEVANESN |
Ga0211736_1047887712 | F008305 | GAG | MLGYTYKDIQNFGNALTVAIDSATDPSVKQGLLTIWDFFEGLLAEGYIDENTFYG |
Ga0211736_104788778 | F004666 | GAGG | MATKREYLVSKGITVGKRGRFSGAAKQALSEAEKNGMKFTAEVKLSK |
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