NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10540998

Scaffold Ga0211736_10540998


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10540998 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1045
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047649Metagenome / Metatranscriptome149N
F072267Metagenome / Metatranscriptome121Y
F076003Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_105409981F076003N/AIDTFNHSLMVSNWNGVYTHKSRERVRDLIADIMNDMSVEIITDKAEFTIDADAGI
Ga0211736_105409982F072267AGCAGMLTQVFEMTEPTLKIGPSGYKLNPEKLKGAPQSVLPYILGCFYFTEDYEYFDVIKDYLDIPEPCKTLEEISQELDEKIDDLIERTKNSFYKSKYIAETLYDTKFNRIIDNFEYAKEHGQFPPKLTYSNLIATGSNITSSFVIKQGNDHEGYYTFGNCRSFRYYMPTKPNFVIRFCMKNLLGFFWVDEK
Ga0211736_105409983F047649GGTGGMRYYETRTYEHQCDFDAKNRAQKASQDYYSKWINLRKEVRNLVREQNLTITPDFAKLIGL
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