NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10581110

Scaffold Ga0211736_10581110


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10581110 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2208
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F005348Metagenome / Metatranscriptome403Y
F014849Metagenome / Metatranscriptome259Y
F018352Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_105811102F018352GGAMGKVKNALMDILAHGDCYGAGWQFVGNAIDYDVWACECNPYNIPADEIQEYHQLFNTKEN
Ga0211736_105811103F014849GGAMLTNWDLIAIIIALAGCLTVMCLFWKQNIEQQKEIRRLRMELRKALKV
Ga0211736_105811105F005348AGGCGGMINSVMSFPCDECNGVGLVFWGNDLDYDVEKCDCSDFALGDLFTSGEAN
Ga0211736_105811107F000447AGGMGYVEIFRMNEDGAGWVDLSEATTAELIDLTLSLSQEGAL
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