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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020151 Open in IMG/M |
| Scaffold ID | Ga0211736_10672575 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23113 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (70.59%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 4 to 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F001464 | Metagenome / Metatranscriptome | 689 | Y |
| F002501 | Metagenome / Metatranscriptome | 553 | Y |
| F013888 | Metagenome / Metatranscriptome | 267 | Y |
| F071247 | Metagenome / Metatranscriptome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211736_1067257515 | F071247 | GGAGG | MGSNNKIPFNPTVIKNGRIVRIRKDGSIKADLGPYKSKKKVKK |
| Ga0211736_106725752 | F002501 | N/A | MWCQKCKGRVFVDRVFSQKLHIELFCILCGKRWMINKETNRFGKWLEKKDQAYAKSSSIS |
| Ga0211736_1067257523 | F013888 | AGAAGG | MATIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLELCDEVRISTRSEWVPIIQNMDMNVKIMVREPSTMSDAVKYMVGDYNDTVLVGMPDTFILNSSSNIYKGLFQENNADLVLGIWECVDALKGRVGQVLVSNNKVVDSEDKADNCNYLDMWGTMLFQNNMIRFIDPKLDHPGKQLKEWISQGFNIKAVRPGGQYMDIGTLRGLKQLYKEME |
| Ga0211736_1067257527 | F000376 | AGGA | MSEYQEKAKECKCCGKHVPLPTVLKEYNGMVVCPTTFSNIVEYQRIWNAIGSRPPGNIRKHFSEYVQQIVELHFIENKKDEK |
| Ga0211736_106725753 | F001464 | AGG | MVRKKRSGIRKKFLYFFLNDKLHKVIRSSRAKDELVAWSYLDKKRVLYSFSDVQKNMETAYTMKQAGQILGRHKVTIEEYILQGKISRPQKVYPISNPDSKWYKFMFSESSILKLHEYILEAGYSKNLPSKAELKALLKNNMILYTKTVDGFVPVWKAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |