NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10732746

Scaffold Ga0211736_10732746


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10732746 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2118
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F005504Metagenome / Metatranscriptome398Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_107327462F000450AGGCGGMGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNLIGDQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWADGRDPSNKVRGMNNKALFTMDLTSFCEKYALEKLLVV
Ga0211736_107327464F001043AGGAGMSDYKDGFNDGYKFAREEIIEKLREIDINDIDSWMLDRLSDMIEGNKL
Ga0211736_107327465F000311GGAMYFELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFNVGTGSIEKVSKIRDKHNLIESYTSEYEPTGYMRR
Ga0211736_107327466F071228AGGAMEETYGATVTPIAVPDTYNPSALVQYKVINGENVTYPITKVTDLEWDLEQGRRWNQNYHDLKEKVNGLEELLVELYNPNYTKEEALQQIAELFGFELSKSVTVTGTINFEVIIQVPLDEVEDFDAHYKLGDELSLTSYGSDVEVNDWSIESTDVDWD
Ga0211736_107327467F005504N/ALEFEEETGWGGEYEIVRGEVKENLEYTNMCYACDSYDTIDYCDNECGEFCSSCNQGSWKDEEAMAECQTHKIYLTTTETKGN
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