NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10764306

Scaffold Ga0211736_10764306


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10764306 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6924
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013185Metagenome273Y
F035760Metagenome / Metatranscriptome171N
F043398Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1076430611F043398AGGMPATGLLNEAMADLKATLTAVTGLRVINDPTKIVPNCVYLDAPSFETIAGGGNIIRVTVPVRVIGSGPAGLPVLQNILSIVATVLGSSVVIMAGQPSMLDIGGQMFPAYDLQMAMQAQTS
Ga0211736_107643062F035760N/AMKYTGYDKTATAKMAGTEKFVDLCNRRWGFTNLGTLVVRQMRSGQGMSVHSTARAADIGFKDTKEGRAAAVQAMQWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGKPGWKLWTDTDNGGSKNGRWIHVELAPQSNGGHAEDGVALEAAWRALPKP
Ga0211736_107643068F013185N/AMSLETTAEITGLKQALSELSKLDKSARFKAAAKIKASSPAMLENARAQFPANIGVTVIHGMAPSKKGKARLAYDKTKVDKGVQIMVGGRARGAGITPLVTLVQKDAAGALFSQAGTRNNTQFTRLLTNVFGRPQRGLWRSRAFIAEQGTVDIMKAVDEVIADANRALQARTAG
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