NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10855783

Scaffold Ga0211736_10855783


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10855783 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F005504Metagenome / Metatranscriptome398Y
F047650Metagenome / Metatranscriptome149Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_108557831F005504N/ALEFEEETGWGGEYEIVRGEVKENLEYTNMCYACQSYDTMDYCDNECGEFCSKCNQGSWKDDKAMAECQTHKVLLTTTETKGN
Ga0211736_108557832F071228AGGAMEETYGATVTPIAVPDTYNPSALVQYKVINGENVTFPITKVTDLEWDLEQGRRWNKNYHDLKEKVNGLEELLIELYDPNYTKEEALQQIAELFGFELSKSVTVTGTINFEVIIQVPLDEVEDFDAHYKLGDELSLTSYGSDVEVNDWSIDSTDVDWN
Ga0211736_108557833F000311GGAMYFELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFNIGTGSIEKVSKIRDKHNLIESYTSDYEPTGYTRR
Ga0211736_108557834F001043AGGAGMSDYKDGFNDGYKFAREEIVEKLKEIDINDIDTWLLDRLADMIEGNQL
Ga0211736_108557835F047650GAGGVMAEDVSVVYYCDSCSVARASYLVKLIDGELAFCAHHYNKSKKALDEKAYEVIELNKKEDSPKLKEMAE
Ga0211736_108557836F000450GGCGGMGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIGDQWNMENGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWADGRDPLNKVRGMNNKAIFTMDLTSFCEKYALERLLVV
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