NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10924632

Scaffold Ga0211736_10924632


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10924632 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13819
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.33%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F001754Metagenome / Metatranscriptome641Y
F003542Metagenome / Metatranscriptome480Y
F005389Metagenome / Metatranscriptome402Y
F009005Metagenome / Metatranscriptome324Y
F009073Metagenome / Metatranscriptome323Y
F009333Metagenome / Metatranscriptome319Y
F010683Metagenome300Y
F016000Metagenome / Metatranscriptome250Y
F017129Metagenome / Metatranscriptome242Y
F018001Metagenome237Y
F048784Metagenome147Y
F066464Metagenome / Metatranscriptome126N
F068458Metagenome124Y
F082161Metagenome113Y
F092051Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_109246321F016000N/AMTSKEFVLWLKGFTEGVHEFNITPKQWDILKDKLAEVKDETPIGIGGFGVLNTTTPMTNPLITPYPHRPYEVYCGDTNGTTITTTPNVGGSITIANPPFGFGSTSTTYKYPSGSAWHYTNGKTHNED
Ga0211736_1092463211F092051N/AMKSFKIRENLIHIDGVLYGPTPSEYKVQGKAGRIQSISIPNRGQFFPISGEFIDSTIKVTDDSTGIVEKNAIVKSKRKPKSK
Ga0211736_1092463214F009333N/AMSYLRFDRHQTFNSEMMDYHSDTLRAVEDFYMDQNKSWFNEVYNMLCGIWDGYLYTDLLESAKQLGLPTHITNRIEYTINFIQK
Ga0211736_1092463217F009073N/AMKNYQIILTAILSFGVAISILNGTAQQYVTFAGELNELGCAVIALTMGMLSTFAIDWKGFIQYLNK
Ga0211736_1092463218F048784N/AMNSNTEKLVSVFSQDELSAMMTAVAGYVNTKRKQGRSTGTEVQAFNKIVDALLVSNYLNAVEVEDKRGRVGVAEYKLAEAAGQF
Ga0211736_1092463219F001754N/AMNNHYVNFAASKMSNNPKFEVIVTYIDFMGRIHNIVCKSRPALKRANEFLKMFKTESVKINQILSEYPVKMGKFPKKFHKEIKTELAVAGFGSVSNFLIK
Ga0211736_1092463222F005389N/AMANKSKAAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG
Ga0211736_1092463224F010683N/AMSKRITKKSVKPAKKVASKKAVAMNVIKHKRVVLESIGTESLPDMVFVSAAPAWAKSIVGKRYVNEDRAKAVIEALDAEKLISKGAKSVLKEMDAAGIVPLDVESI
Ga0211736_1092463228F003542GAGMKENFDYDLFDSKIGYDSYNKLYLIRVYDLLVFEMNNNPAPSWIGIMRKMLGDNPMGLNPSGYYSSVRRCLKEIGVCTYDSTKRHFVKGPNWNRFVSSEDWSWFIMKTGSGERSKVVK
Ga0211736_1092463229F009005N/AMSESEMLQRATLLGMDEELLSYAKQIQRQLGTEGDEALWLDCLEMAYNELIVNR
Ga0211736_109246323F068458N/AMLTIENYKKIKNRWFGDWQIGKIMEDKSCYALQCFHSSGKRSITIVIFRNETIDTEFNEQAYNISLIDDMKGSSSIIEDIIYKAVLEDMELFGESLVHYLNTL
Ga0211736_1092463230F082161N/AMRGKKVQPGEQVASNKAMHCNMQLFENPDGEYYPVVEKMERPALVRGEYHPIGNRFNYPKQWGKKYAAKVLLENKIAVQQDILYRAELELSKLQRCLESIQQWSDTDE
Ga0211736_1092463231F000785N/AMRVTNKRLGMKFDCVKLLNWAEELLGPSKCTAIAFTWDIEEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKHGYKNNPYELEARANEKLVKRAYKKRK
Ga0211736_109246324F066464N/AMSIMRTKGQGNLVVNKNRFSGKAIITSTPISAGSWFTNYYQQNQNQKNLNIDSNRKLVIQNYSKDLGSGVFWGWDVIAADEMDDVYLFQLKHRENSKLRIYITLGRELQVSDLENNLFLMYQCYVHDDDGDWHETFWLDSDKLNYKSFWDRIETITDKHHPLLPF
Ga0211736_109246327F018001N/AMLTIENIERLKDTILNDWKILDAGEGRAEIGKNIYIITFARLNNAGVLLDDRAGVIIDRDKSQLMSGYGIRVVYEHWDYELHHTYWRKENIMDKNVFFGMALNKINEEYYKRK
Ga0211736_109246329F017129N/AMSRYNYFNDVQAYEALEEKRAKIQMDPAYQAWVQELHISQSYVEPEGAIRAKLLNEQYDFSSKTTKSPILNFLKGKGIWS
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