NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10992527

Scaffold Ga0211736_10992527


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10992527 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9235
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F028150Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1099252712F000473AGGMADKDFFKYGINQWTGEPNKPVFYTEEMKKAVHGIKKPAMLMMDIVKYPDFLALRLYEDNFLQFDGIKKEIVIDYVSKVKKAIESYGVRCELEGKQSANII
Ga0211736_1099252713F000671N/AMEKILCYSCNKSKNNLVMRKSVLLPINLFICETCSVSKFEPRWVIILSARQNGLEHIKDYILKKKYIGKEIAATEVIV
Ga0211736_1099252719F008814N/ALDKITVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMAQNSGETAFWVIQTFMSKFNEAAEELKDK
Ga0211736_109925272F028150AGAAGGMNMNWLKKWGFAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASIAVWFLTIGIREKSEKDE
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