NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_11013635

Scaffold Ga0211736_11013635


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_11013635 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043400Metagenome / Metatranscriptome156N
F105158Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_110136351F043400AGGAGMFNFFNKKLPSDFDQVQEKGREVSEIFYKPNQEQPDLNLFDKVNKSKFKDFEVSSFASFFEKLELIPTVDLGDVNLKVRTTNPSAPIDADLCQVWMRRTYTNPTTGQTTEQWLNWVPNDDAAKKYFKFSLFSGETQTFNFDVSTFDVGKYDSFRFIFFTNHWTVLADQMAENVSFEILTKQKRVKAPFVEILADKIQDPGPDGKLHIPYVIKMPP
Ga0211736_110136353F105158N/AMEKLPKNQKEYYHNKIREFEKSTDKFMNTKNVNKYYDYTIESAGYNLPAAMNMMCKHGCYIYHDLLTEEDPRSNGTNWLKFGYANANGKTYKYYYETKQWGQEILKNDLEFYKNKTWKVAKLDNTNLPYLDPGEDYLPYAIENKHIGSNFDDFLKTNNIELKRDINWAVKMLDAGKMMSREGNPNLTLFPKKYDHAESTIT
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