Scaffold Ga0197142_1000014

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0197142_1000014

Scaffold Ga0197142_1000014

Overview

Basic Information
Taxon OID	3300020153 Open in IMG/M
Scaffold ID	Ga0197142_1000014 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	142330
Total Scaffold Genes	120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	82 (68.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Nevada
Coordinates	Lat. (^o)	40.6614	Long. (^o)	-119.3661	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040122	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0197142_10000144	F040122	GGAG	MKAEQLLELLEQHINELPHLMGEEEWQAFRAVLHTSVQQMREGISLNELETAVQPISDHLVRCPRVREKLRAFSESSSQRLSQSPADTTPREQQVNQVANRFRVFAHTHAPATDEEANEKREATKLPKTTDRHQH

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