NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197142_1001052

Scaffold Ga0197142_1001052


Overview

Basic Information
Taxon OID3300020153 Open in IMG/M
Scaffold IDGa0197142_1001052 Open in IMG/M
Source Dataset NameSediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25530
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Nevada
CoordinatesLat. (o)40.6614Long. (o)-119.3661Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F038570Metagenome / Metatranscriptome165N
F040491Metagenome / Metatranscriptome161N
F042758Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0197142_100105215F038570AGGAGGMPATHLRRVQLGKQTVFNTPVAATSLLRGVTDGSISIQHSDTVVEELGRNISDLVIVSQRHVEGELELQATYEDILYGLFGLFGPVAPSGNPPARVFNAPNTSFAAPQIYTIEYGTDGAEYRVVGGIIREWTLSYEANEGVTESWSIIGRNVQAQAMTANLPTRTVLPILSRHASFFVDNIGTAHGTSGIPGTVISAELNINTNRHLKMFEGANPLGWGEGRWEVELSMTAEFNATAKAWVDALINDNVARNIRMEFVGVANSKELRIDFVGMLTEPPELFGDRDGNMTVDLTWRALVGGPLNNWLQIRSISGVATLP
Ga0197142_100105217F022604GGAGGMVSAVNAVHAVVATVTGITSALKAVPGALNTTQLPCAIITPTSETRRQHAHALQRIETLVNVRIVHSPVAQGVTTAQQDALYDLTDDVMDAIMADITLNGQIDHVAEVDAAEASIYSLAGTDYLSISISVRVIEKI
Ga0197142_100105219F042758AGGAGGMKPTDIINLAGRLPAQAITSATNTPSVDMAQLRGVAAICVVGSVTNAPSFKLQSSADNTTFTDLPDKTINSIAANSEGVINIHAEELPAGHRYIRAVVNGSATVAVVFIGVDARGLPQPALSTTTVVN
Ga0197142_100105228F040491AGGAGGMSLEAVREFIAWIASLTEVKIIAASILLNTALAVAASIRNDEFRLPELASFLYKHLLPYIVVYVSARIAGDELGLGAIAPAVWLIIEASLIGRIVASLNELGVPIPDELARRVAKRL
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