Basic Information | |
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Taxon OID | 3300020153 Open in IMG/M |
Scaffold ID | Ga0197142_1045517 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1749 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Nevada | |||||||
Coordinates | Lat. (o) | 40.6614 | Long. (o) | -119.3661 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F029452 | Metagenome / Metatranscriptome | 188 | Y |
F092114 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0197142_10455171 | F092114 | GGAGG | MARELKSIVASELEKRLGDNPPDRDIWLIKCKRLRELVSNLAPNQVISTSAPEGHSNLLLVNIQIKTHAMLQLLRGTLVDFNGNAELQQEFAKFLQDNEIVLREAILQRLVVGLGAVCVVGDSTTGWRLQSISPNDLWWDTQRGNVIQPEWIAREYRDTQGVRYRELWEREKRYIQRVGDTDVQVEANPIGEIPIVLFPAFFIPDTVYPIGDVELAYPQQAILDEVRRAILNMARRGAGFYSVKRGSIDETELVRLTNPDEVYVLVNEQDAIVPVNTPLPNSEWQALETLAKQDMDALMG |
Ga0197142_10455172 | F029452 | GAG | MVMAMVYEYRCEQCGNVMLAKRTVENRDDCPLCAVCNHPTKRVFPPRALIVVPRAYQLECAREAAKCVLPSTPAEKRYWDTFGLEE |
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