NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197142_1053134

Scaffold Ga0197142_1053134


Overview

Basic Information
Taxon OID3300020153 Open in IMG/M
Scaffold IDGa0197142_1053134 Open in IMG/M
Source Dataset NameSediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Nevada
CoordinatesLat. (o)40.6614Long. (o)-119.3661Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058176Metagenome / Metatranscriptome135N
F098762Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0197142_10531341F058176N/AVLSFNPPANKQIVVDGYGIPDDINTFTLQPETQLMDAVAMLTAVKYLAVYADAQTQSRASVLFSQYQSVLQQFLNRHSDSTRAVDDNQWSETNILTRAREYARRYTERIDDLDLHYVRSAWQQFCIDTSAFRTEHIINTIGNQREYTHPLVRVSQVFLDNDELVILPEPNEYYRACAVYPNRIVLSFDPEPNQQIRIVGYGVPEIDTVYLEPATRLMDGIAMLTAYNYLIRFAEPTQIQSISLYQLEYRKIVDDFTARVVDVVRQRGGNLPVVGYVSFV
Ga0197142_10531342F098762N/AMRAISYPSLVERVSQPVISEHIDYSAVDDSIRAWYPFTRVQTTDRVYGASVWKNNLYYVAGDKLYRYPNTQLGTLDNEPAVDERAYLIPLSDVLVIVASGTIYLYDTANGFRKWVKPTPPITAPNTERVLFSCNRGTDLGGSATFTDGANEYTLSDVADGEPGAHRWFALDLPNDRPTWVSEISFRLNRWGEFISTREHSAVELHADTTGNNQIARVVLPYPYTIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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