NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0197142_1080454

Scaffold Ga0197142_1080454


Overview

Basic Information
Taxon OID3300020153 Open in IMG/M
Scaffold IDGa0197142_1080454 Open in IMG/M
Source Dataset NameSediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Nevada
CoordinatesLat. (o)40.6614Long. (o)-119.3661Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040512Metagenome / Metatranscriptome161N
F057955Metagenome / Metatranscriptome135N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0197142_10804541F076974AGTAGGMANSTKRRGRPRKSPQLSLDEFLAVLELAVENAKRHQMLESILVIDNKLKVAFCVPLFGLTQYLPSSARGKPVAEQSPTQLRMPL
Ga0197142_10804542F040512AGGAGMIDLISTVTVAGLSVLSARYLEQAAWFQRLQPETKRLIAVAIAALIALTLHTIQLFFTETSDVKAAFSTALAIVLQQVYHALTKEDTE
Ga0197142_10804543F057955AGGMDLFDFFSSYGVLGITALISMSLSLWLLRENQKTLDQCNARVDKLIETHIRFVENVTDKMDELLNDISRLIEKAEITISELERAAKKESER
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