Scaffold Ga0194049

Basic Information
Taxon OID	3300020157 Open in IMG/M
Scaffold ID	Ga0194049_1000104 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020157 Open in IMG/M

Scaffold ID

Ga0194049_1000104 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32871
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (42.86%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

32871

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (42.86%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.69	Long. (^o)	-93.718	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.69

Long. (^o)

-93.718

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F029798	Metagenome / Metatranscriptome	187	N
F032582	Metagenome	179	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0194049_100010411	F001272	N/A	MIKIELTTEQANALMQLVDIAIKAGGYQNAKVAVPIADIILEAAKQSEGTN
Ga0194049_100010413	F015354	N/A	MNAYFASLLRHVLTAAGGYLVGKGLVSSDQAGELVGAAVTASGVAWSIYNNKKNADAAGQ
Ga0194049_100010416	F012040	N/A	MINWMRGLTKENPKNLLELPDVNIADWITNGQQAELALIMRNPVLRMALRIVAESIPIPMPSHGSKESDIVFAAGVTAGYAHCLENLRKLSVVDVTKELEATFDNKN
Ga0194049_100010418	F032582	N/A	MRVDFDNTPTFIISKPESEKEKRCIRYMKSFEIDAVPMYGFRSHNCGISTDYYHNCEKEKAKVKTIVAGLSHFSVWSAIKWMVEAKVTNHRTFLIVEDDVEFIDKNWKAKANDNLEFLPNDWHVIYLGSCCADPIEDHAYIASNLYKLVRGMCTHAYLVNYEGACKLLETNQKVWCPIDIQIAIDSMPRMNFYGILPRLATQENTNLYP
Ga0194049_100010423	F004664	N/A	MNKRTGYKILNEHMVIPGGWHYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPGNLDELIVEYACRNGADCTYNEVELSKPAGRKSLEIGDVIRFSMSLLHGLTIGGGKVGQEEANRRASICAGCRFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDEQLQSCEFCGCFIRSLVWFPIETLYKFADSTENENLPDHCWKKRPCTAT
Ga0194049_100010426	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFVSPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLKGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANVDEIKCGRMMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQTISLLTNGALGSRSVITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGSDQSIQFWEISKAERSDKSVASDKKKIEWLIQTRGYNFEIPFGLKRLDSGDIFIDELDGEDSLDGQTNYVDRKVSFNVKYRPDQYPGWIDWANWSECATTDQCGNLCPTLKNFQPQYRPKMRLPTPEDTSCNSTISAPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESVVGECRTFQGCKTLEACDVNPFNYTSE
Ga0194049_100010428	F005740	GAG	MKLIVQDIQSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLILALPYVQSTKKFTSLTGVIREATNTVSRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNAATANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0194049_100010430	F007361	GGA	MSVLFSLENDCLGIHEQGATDPNWKQSIEGYRLIHKYVADCSTYGYLPKAVVDDSIKVYVKKDAKSSSKECTERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWVHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEVF
Ga0194049_10001045	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGVPTGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSVRAQRSWETRYQNVFAKYAIKAVADSSFTQTETIPAGVNEFPWADGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPINRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0194049_10001048	F029798	N/A	MANISCEDALALINEAYGASCKSPRERVLLELGLLWEAATLGGTADITADNTVIDSSSTMITADMTEFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194049_1000104

Overview

Ecosystem & Geography

Associated Families

Sequences