NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10005861

Scaffold Ga0211734_10005861


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10005861 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4503
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F008996Metagenome324N
F044982Metagenome153N
F057194Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1000586110F044982GGAMEFDVFVGGSGKKLTDLQKEALADFGVSLADGAIENKSYALVTKWLEGVVRLAKQNLANANAIASNSLAQSIVVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPIQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR
Ga0211734_1000586111F057194N/AMSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPTLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGV
Ga0211734_100058616F008996N/AMKLLANIAYHHHPNRVENLIKVIEAIKSYPVQSDIFVDTNDPQAAQELAHLPVTFHAHTAMGHPWELTSKHRHRIAEVYQHFDWVAYFEDDMMLPKEGFLNFTKQFDAMFEDNLYPSFTRIETYPNREGEFSPDISFNLTPNMWREWNGKTYASIPFCNNYHAFWMFSTKRLAEVLSRNPQALQMIANTDLYRESLASLPIWSLGFAPMLEMDENGELMDHCKVYHLTNNYANVSMDIKAIFRR
Ga0211734_100058618F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGYFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSRHLTKGMQAP
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