NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10107760

Scaffold Ga0211734_10107760


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10107760 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1624
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010448Metagenome / Metatranscriptome303Y
F055682Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_101077602F055682GGGGGMYDINTLSPLKKHWLLRTSNIPRRFIGLEPSDITEKVGSFPGELSSWVDDVISGQVIKSIGNIGVNGVGLVFDGGPGLGKTTHAVVAAMEIVRHLPDDDALASKLLGLNSTEYGLKFRPVYYMTYPEFLSRKKSTFDMEGEDKREMSYELDGFHGRCRFDWLNVRVLILDDLGKEYGSKYDDTSFDEILRLRYDKGLPTIVTTNVRLENWESQYSEAMASFANEAFIRVPILGSDLRGAQ
Ga0211734_101077604F010448AGAAGMKNGDISNVSSPQVVCVTDVTLKLKEEVSKRLLVKKTSFAVGEIDLLAANKLWHLSNNYAFSLELAGFESEGWTEELLDKAFEKLERRVVNPFNYWQLYEDPHELVGVLPYRANLKAVIDVPSRVAMYGSAGVQL
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