NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10146677

Scaffold Ga0211734_10146677


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10146677 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4342
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F022197Metagenome / Metatranscriptome215Y
F023106Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1014667710F022197AGGAMDTTEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMVDELSWDDAQWDIEENVFVPELQVWTTK
Ga0211734_1014667715F007691N/AMLTNHPHTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVGE
Ga0211734_101466773F023106GGAMRISRRVTDEEKVANKLGNTISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAQNGF
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