NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10222023

Scaffold Ga0211734_10222023


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10222023 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1192
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_102220231F000258GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDEEEYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQIMFTIYSTSVSDINEIRNYMTDEFRRMDESARDINKWTGLSDKFKFHSVWIADISPTAPSEELQGFFSAEVIL
Ga0211734_102220232F001900N/AYANQNGPLKDSTVAQISAYVYYEAAVLSKLTTNAQFKALFTKTMFDQINLDFGNYIDALARSKPKSLHHVYEWKRTGNKAARLFKLNKISEDGLSFKVDYEFLPSRSMVPSASGRRRHMFANKASVMEEGKPLVIRPKNAERLVFEVDGETVFMPKGKSVTVKRPGGSASTNQFTLAHSRFFSGNLVNASIKNSGFQRIFNSSITKALRVPSSIKKVQYSFSPNLIRSQADAALVASFGGAM
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