NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10587702

Scaffold Ga0211734_10587702


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10587702 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3054
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F023344Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_105877023F023344N/AMTTKGDNMEAFTDTVGEHILGAIQVDIEQHLFEQWNNANLDEGSAFAEYKFMQFAPDNLKQSYNEYYGYIEGDEFLL
Ga0211734_105877024F000450AGGCGGMGDRANFVFVDSKGESIVLYGHWAGHNMLANLADAVIKARPRWTDESYATRIAISQLVGDQWNMETGWGLQVNAISDNEHRIPVIDFSQQTFSLHEQDDWANVQNKVRGMKNEAIFTQDLTSFCEKYADKLVSV
Ga0211734_105877027F000311GAGMYFELTAPDRLSMEMAYWDAQITGLDPQAMDPLTFNIGTGSIEKVSRLRDKFNLKETYVSDYEPTGYQRS
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