Basic Information | |
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Taxon OID | 3300020159 Open in IMG/M |
Scaffold ID | Ga0211734_10793168 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32463 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (90.48%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014845 | Metagenome / Metatranscriptome | 259 | Y |
F034856 | Metagenome / Metatranscriptome | 173 | Y |
F047017 | Metagenome | 150 | Y |
F057318 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211734_1079316820 | F057318 | GGAGG | MAKEAKNNFQVSATGGAGTSGQPARYAAGIDNAEDFYEMQTAAKMQGQNPAFSNVPSPSSQRPFRGDSAQKLVPLNAPTQRPDEDVRTGGSMNTESMYANDATATGEDADRMRAALPYLSVMAELPQTSNAFRNYVRYLKSVL |
Ga0211734_1079316823 | F047017 | AGGAG | MAKPGEGGPLIDDGGNPFAGATTSPSMTTWIVNLLKNVPELKAIYDTVRDPVTGKYLYNAAAIVDLITSSSWYLENGPTVAGNIAARYKFGEKYYQQKIKEFKISISGLATAIGLDMADPDTADYLSSLAETAYLNNWDNDYIENTIISNKDIFGKIQGGAYATAVQDLAAYSNLMGFPMSEQSRADYQRRLIGSTTKEGLRVRATPDDIKREINAKAAQLYPFLSDDFTAGRTLWDVTSVQRKKWADLLEVDEDTLDWNDPLWKDGKIFSMVDEKTGKMVMRPSWDAEKLIKQDERWQYTENATRLYEGYGIGMLNKFGYAAI |
Ga0211734_1079316827 | F034856 | AGGAGG | MSMYYFTTPTVDETPAGDHILFARIELPRGISVLRLNGVYSSFRYPSQIQTNQAEEYYLGGTKSLINQQTADALTAQGYGAYITPA |
Ga0211734_1079316829 | F014845 | AGGAGG | MAARKPRKKPVKRVRTVKDESYTELEMYCIWLNEYYHALLKSGFKSDLALAFVMEKSSYPSWVNYRSPSEDEIKRMLDEDDDD |
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