NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10872270

Scaffold Ga0211734_10872270


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10872270 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2122
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008356Metagenome / Metatranscriptome334Y
F009682Metagenome / Metatranscriptome314Y
F024782Metagenome / Metatranscriptome204Y
F102699Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_108722702F009682AGGAGMQKDLYMKKPNENIVIQSDDLKFDGKNIIIPSYYAGIVSEYLANVDLQAAGFNDADMHDYLAFCSFFEAILDHKNKNIN
Ga0211734_108722703F008356AGGMTNTSISEFERTKPTETYKKIAQLEKLIKEEQIKTENLYSNRIATLDKMLKHTQELMETFKKGE
Ga0211734_108722706F024782N/AMIEKAIERLRAYNKWRTGEDDRTMDEAGIQPSQLTADIQAVCDELEKLISMYASRN
Ga0211734_108722707F102699GGAMHEPSFYLSLDLPKNFTREDAEKIRKDVLDFLEGKRHYGAKYDGKNGITVKIVSVSTNHD
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