NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10880018

Scaffold Ga0211734_10880018


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10880018 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6017
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009397Metagenome / Metatranscriptome318Y
F011368Metagenome291Y
F047018Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1088001814F047018AGGAGMLQLIGFCAVVYLGWVSGIIQAMLLITAGLLTTIAGV
Ga0211734_108800185F009397AGAAGMSEQFLLPMARNTVTGQTVKTQDLTGSRFTLSQQTLAQIAADQCAVKMTDRTGDPWQGFVQTYTPSKRR
Ga0211734_108800187F011368N/AMTYTLQHRDIAGCNLSPGDHCLVTEHNRIILARVVKLYEASNQLQLQPLSSDAGGRRSKPAQKRIRRECYNVYRIADTEITVSILRGAI
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