NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10912417

Scaffold Ga0211734_10912417


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10912417 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1835
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051122Metagenome / Metatranscriptome144N
F058141Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_109124174F058141GGTGGMNNLKNLITNNMKIRIENIECRLSHDTYEFVRWYPNKYYGTKNKLIEEGYKLHNIHDDNFILTKGNHTIHDSCFLNPEGCFTIATIVYDKKENNTEIKSVGSRLLDLTKKEKNYFFEVYKYADKQIRKENKSND
Ga0211734_109124175F051122GAGGMRINKLEKKIKVMTNEDYKLQLSALKSTLEIMLIDGEKKGKEISVAYECGMYIGTIKAVISHLEELTNA
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