NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11034513

Scaffold Ga0211734_11034513


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11034513 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1393
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F048674Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_110345131F048674N/APIVTYIFIFELCAINAWIAYYVYSRPGLVTNMDDLIRVSDIIFSGDEMAMLGGIIGFWFGSRSWSKK
Ga0211734_110345133F000166AGGMPNIPTPEDTKLFAQSVRKWQQVLSLGDWRIEKGSKAAKAAMASVEFNTTARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSKDSNGKC

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