NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11240728

Scaffold Ga0211734_11240728


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11240728 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14365
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001725Metagenome / Metatranscriptome645Y
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y
F028807Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1124072814F028807N/AMNGVSLADPYAFLKAVFPQWNGEPAASNGAYVLVTFDAPQTPVDLGPLVKVEVFDPNASQLP
Ga0211734_1124072818F001923N/AVSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVCAAAITAALVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVVGKPKKPHGKGKAIKPAAKRGK
Ga0211734_1124072819F003583AGAAGMGKAKPSSQQPNGGSNLVLAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIKSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFIRSRRQSVS
Ga0211734_1124072821F003714N/AMPNAHHPYTDHLTFAGRPIPLKRPMAVYAANRLQAILPQIAALNAAGKSQADAAAALETTVCTLRMWLDITGTTWVNLKRRGPYKRNNHA
Ga0211734_1124072824F000957N/AMRHLIEEIFEVNERVMCGDLVSAKAAIASTRMKKLLNHYHEALHEDGASKVSLQAYVAAGGWVGIQYSYEMDGFEVAGSQVPRRV
Ga0211734_112407283F001298GAGMGVFFVPYQFGQIQMSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVATVLESGGYMERTQYSVRLPAVTASWTKPDGSTGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLLVIDDNQ
Ga0211734_112407285F001055N/AMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSNATQTLPKAVVLCDSARAPGDLPEGEGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVTIGSEDEGIDERSWATAFSFELLVVLPAA
Ga0211734_112407286F001725N/AMAAITNGTSCVYGIAGTVTNLFVQSYSLSSSFNSEAMVVDETGITKTHRLDDRKSEITIEGIAKTTDMPTLGAALAFTVNTKSAYPTGTASISFNGVITKVDDKGSNKGFTAVTITAIDYEGITPA
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