NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11280934

Scaffold Ga0211734_11280934


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11280934 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006303Metagenome / Metatranscriptome376Y
F009333Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_112809342F006303N/AMLNWIKEKLVPSYKLNNKETLILDVITNMCEQADTDILMAPLSGRYYLVNKRLEYWIRVFDDGVMITNHKFTFSNTSPQGFQHMVIKVVEAAIEKSRDEFETAVFQNEVELLENIVSNIKHKK
Ga0211734_112809343F009333GAGMNIVRFNRHELFNEDWMSYHSETLREVENFYIDRNESWFNEVYNQLCGVWDGYLYTEMLESAKQYGLPTHLLQRIANTIRFIQSNQN
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